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Core Publications

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Refereed publications supported by the Nevada Bioinformatics Core

2014

  • Borland AM, Hartwell J, Weston DJ, Schlauch KA, Tschaplinski TJ, Tuskan GA, Yang X, Cushman JC (2014) Engineering crassulacean acid metabolism to improve water-use efficiency. Trends Plant Sci. 2014 Feb 19. [Epub ahead of print]. PMID: 24559590

2013

  • Braga MV, Pinto ZT, de Carvalho Queiroz MM, Matsumoto N, Blomquist GJ (2013) Cuticular hydrocarbons as a tool for the identification of insect species: puparial cases from Sarcophagidae. Acta Trop 128: 479-485. PMCID: PMC3839396
  • Ulrich C, Quilici DR, Schlauch KA, Buxton IL (2013) The human uterine smooth muscle S-nitrosoproteome fingerprint in pregnancy, labor, and preterm labor. Am J Physiol Cell Physiol 305: C803-816. PMCID: PMC3798678
  • McDowell SC, López-Marqués RL, Poulsen LR, Palmgren MG, Harper JF. Loss of the Arabidopsis thaliana P₄-ATPase ALA3 reduces adaptability to temperature stresses and impairs vegetative, pollen, and ovule development. 2013 May 7;8(5):e62577. PMCID: PMC3646830
  • Colletti E, El Shabrawy D, Soland M, Yamagami T, Mokhtari S, Osborne C, Schlauch K, Zanjani ED, Porada CD, Almeida-Porada G. EphB2 isolates a human marrow stromal cell subpopulation with enhanced ability to contribute to the resident intestinal cellular pool. FASEB J. 2013 Feb 14. [Epub ahead of print] PMID: 23413357
  • Gadam RK, Schlauch K, Izuora KE (2013) Frax prediction without BMD for assessment of osteoporotic fracture risk. Endocr Pract 19: 780-784. PMID: 24121261
  • Kulick D, Langer RD, Ashley JM, Gans KM, Schlauch K, Feller C (2013) Live well: a practical and effective low-intensity dietary counseling intervention for use in primary care patients with dyslipidemia -- a randomized controlled pilot trial. BMC Fam Pract 14: 59. PMCID: PMC3662581
  • Suzuki N, Miller G, Salazar C, Mondal HA, Shulaev E, Cortes DF, Shuman JL, Luo X, Shah J, Schlauch K, Shulaev V, Mittler R. (2013) Temporal-spatial interaction between reactive oxygen species and abscisic acid regulates rapid systemic acclimation in plants. Plant Cell. Sep;25(9):3553-69. doi: 10.1105/tpc.113.114595. Epub 2013 Sep 13. PMCID: PMC3809549
  • Samburova V, Lemos MS, Hiibel SR, Hoekman SK, Cushman JC, Zielinska B. Analysis of triacylglycerols and free fatty acids in algae using ultra-high-pressure liquid chromatography mass spectrometry. J Am Oil Chem Soc 2013 90:53-64
  • Tunc-Ozdemir M, Tang C, Ishka MR, Brown E, Groves NR, Myers CT, Rato C, Poulsen LR, McDowell S, Miller G, Mittler R, Harper J. A cyclic nucleotide-gated channel (CNGC16) in pollen is critical for stress tolerance in pollen reproductive development. Plant Physiology 2013 Feb;161(2):1010-20. PMID: 23370720
  • Yobi A, Schlauch KA, Perryman B, Oliver MJ, Cushman JC. Biomass production, nutritional, and mineral content of desiccation-sensitive and desiccation-tolerant species of Sporobolus under multiple irrigation regimes. J. Agron. Crop Science. Article first published online: 7 Feb 2013. PMID: 23239830

2012

  • Burnham-Marusich AR, Snodgrass CJ, Johnson AM, Kiyoshi CM, Buzby SE, Gruner MR, Berninsone PM: Metabolic Labeling of Caenorhabditis elegans Primary Embryonic Cells with Azido-Sugars as a Tool for Glycoprotein Discovery. PloS one 2012, 7(11):e49020. PMID: 23152843
  • Feller C., Schlauch K.A., Harris F.C., An Introduction to Proactive Server Preservation in an HPC Environment. Proceedings of the 2012 ISCA International Conference on Advanced Computing and Communication: June 2012, p. 51-57
  • Haider MS, Barnes JD, Cushman JC, Borland AM. A CAM and starch-deficient mutant of the facultative CAM species, Mesembryanthemum crystallinum reconciles sink demands by repartitioning carbon during acclimation to salinity stress. J. Exp. Bot. 2012, 63: 1985-1996. PMID: 22219316
  • Jones M, Johnson M, Samourjian E, Schlauch K, Ozobia N. ERCP and laparoscopic cholecystectomy in a combined (one-step) procedure: a random comparison to the standard (two-step) procedure. Surg Endosc 2012 Dec 13. Epub ahead of print. PMID: 23239300
  • Martin LM, Holmes SD, Henry LL, Schlauch KA, Stone LE, Roots A, Hunt SL, Ad N. Health-related quality of life after coronary artery bypass grafting surgery and the role of gender. Cardiovasc Revasc Med. 2012 Nov;13(6):321-7. PMID: 23084324
  • Altick A, Feng CY, Johnson AL, Schlauch K, Von Bartheld CS. Differences in gene expression between strabismic and normal human extraocular muscles. Invest Ophthalmol Vis Sci. 2012 Aug 3;53(9):5168-77. PMID: 22786898 
  • Tillett RL, Wheatley MD, Tattersall EA, Schlauch KA, Cramer GR, Cushman JC. The Vitis vinifera C-repeat binding protein 4 (VvCBF4) transcriptional factor enhances freezing tolerance in wine grape. Plant Biotechnology Journal 2012, 10:105-124. PMID: 21914113

2011

  • Bego MG, Keyes LR, Maciejewski J, St Jeor SC. Human cytomegalovirus latency-associated protein LUNA is expressed during HCMV infections in vivo. Archives of Virology, October 2011, Volume 156, Issue 10, pp 1847-1851
  • Curran A, Chang I-F, Chang C-L, Garg S, Rodriguez Milla M, Barron YD, Li Y, Romanowsky SD, Cushman JC, Gribskov M, Peck SC, Harmon AC, Harper JF. Calcium-dependent protein kinases from Arabidopsis show substrate specificity differences in an analysis of 102 substrates, Frontiers in Plant Biology 2011, 2: 1-15. PMID: 22645532
  • Deluc LG, Decendit A, Papastomoulis Y, Mérillon J-M, Cushman JC, Cramer GR.. Water deficit increases stilbene metabolism in Cabernet Sauvignon berries, J. Agric. Food Chem 2011, 59: 289-297. PMID: 21128664
  • Ramos AA, Polle J, Tran D, Cushman JC, Jin ES, Varela JC. The unicellular green alga Dunaliella salina Teod. as a model for abiotic stress tolerance: Genetic advances and future prospects. Algae 2011
  • Suzuki N, Sejima H, Tam R, Schlauch K, Mittler R. Identification of the MBF1 heat-response regulon of Arabidopsis thaliana. The Plant Journal. 2011 Jun; 66(5):844-51. PMID: 21457365
  • Tillett RL, Ergül A, Albion R, Schlauch KA, Cramer GR, Cushman JC. Identification of tissue-specific, abiotic stress responsive gene expression patterns in wine grape (Vitis vinifera L.) based on curation and mining of large-scale EST data sets. BMC Plant Biology 2011, 11:86. PMID: 21592389

2010

  • Alkayal MF, Albion RL, Tillett RL, Mark S. Lemos, Hernandez-Gomez L, Cushman JC. Expressed Sequence Tag (EST) profiling in salinity shocked Dunaliella salina reveals high expression of protein synthetic apparatus components. Plant Science 2010 179: 437-449
  • Aw T, Schlauch K, Keeling CI, Young S, Bearfiled JC, Blomquist GJ, Tittiger C. Functional genomics of mountain pine beetle (Dendroctonus ponderosae) midguts and fat bodies. 2010. BMC Genomics, 11:215
  • Baze M, Schlauch K, Hayes J. Gene expression of the liver in response to chronic hypoxia. Physiological Genomics 2010 May; 41(3): 275-288 
  • Cartwright MJ and Schlauch, K, Lenburg ME, Tchkonia T, Pirtskhalava T, Cartwright A. Thomou T, Kirkland, J. Aging, Depot Origin, and Preadipocyte Gene Expression. 2010. J Gerontol A Biol Sci Med Sci. Vol. 65A, No. 3, 242-251
  • Kuhn A, Schlauch K, Lao R, Halayko A, Gerthoffer WT, Singer CA. MicroRNA expression in human airway smooth muscle cells: Role of miR-25 in regulation of airway smooth muscle phenotype. Am. J. Respir. Cell Mol. Biol. 2010 Apr,42(4):506-13.
  • Mittler, T, Levy, M, Feller, C, Schlauch, K. MULTBLAST: A web application for Multiple BLAST Searches. Bioinformation 2010, 5 (5) 224-226
  • Oliver MJ, Cushman JC, Koster KL. Dehydration Tolerance in Plants. Methods in Molecular Biology: Plant Stress Tolerance 2010 639: 3-24
  • Silvera K, Santiago LS, Cushman JC, Winter K. Incidence of Crassulacean acid metabolism in the Orchidaceae derived from carbon isotope ratios: a checklist of the flora of Panama and Costa Rica. Botanical Journal of the Linnean Society 2010 163: 194-222
  • Smith DR, Lee RW, Cushman JC, Magnuson JK, Tran D, Polle JEW. The Dunaliella salina organelle genomes: large sequences, inflated with intronic and intergenic DNA. BMC Plant Biology 2010 10:83
  • Sreekantan L, Mathiason K, Grimplet, J, Schlauch K, Dickerson JA, Fennell AY. Differential floral development and gene expression in grapevines during long and short photoperiods suggests a role for floral genes in dormancy transitioning. Plant Molecular Biology 2010 May; 73(1-2):191-205 
  • Sunagawa H, Cushman JC, Agarie S. Crassulacean acid metabolism alleviates reactive oxygen species in the facultative CAM plant, the common ice plant, Mesembryanthemum crystallinum. Plant Production Science 2010 13: 246-260
  • Tran HA, Roy SK, Hebsur S, Barnett SD, Schlauch KA, Hunt SL, Holmes SD, Ad N. Performance of four risk algorithms in predicting intermediate survival in patients undergoing aortic valve replacement. Ann Surg. 2010 Nov; 5(6):407-12 

2009

  • Altick, A. L., Baryshnikova, L. M., Vu, T. Q., von Bartheld, C. S. Quantitative analysis of multivesicular bodies (MVBs) in the hypoglossal nerve: evidence that neurotrophic factors do not use MVBs for retrograde axonal transport. The Journal of Comparative Neurology 2009, Volume No 514 (6): 641-657
  • Baynosa, J., Westphal, L. M., Madrigrano, A., Wapnir, I. Timing of breast cancer treatments with oocyte retrieval and embryo cryopreservation. Journal of the American College of Surgeons 2009, Volume 209 (5): 603-607
  • Chang, I. F., Curran, A., Woolsey, R., Quilici, D., Cushman, J. C., Mittler, R., Harmon, A., Harper, J. F. Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana. Proteomics 2009, Volume 9 (2): 2967-2985 
  • Deluc, L. G., Quilici, D. R., Decendit, A., Grimplet, J., Wheatley, M. D., Schlauch, K. A., Merillon, J. M., Cushman, J. C., Cramer, G. R. Water deficit alters differentially metabolic pathways affecting important flavor and quality traits in grape berries of Cabernet Sauvignon and Chardonnay. BMC Genomics 2009, Volume 10 (1): 212
  • Grimplet J, Ben Jouira H, Wheatley M, Deluc L, Cramer GR, Cushman JC. Proteomic and metabolomic analysis of grape berry tissues. Proteomics 2009, Volume 9 (9): 2503-28
  • Miller G, Schlauch K, Tam R, Cortes D, Torres MA, Shulaev V, Dangl JL, Mittler R. The plant NADPH oxidase RBOHD mediates rapid systemic signaling in response to diverse stimuli. Sci Signal. 2009 Aug 18;2(84):ra45
  • Silvera, K., Santiago, L. S., Cushman, J. C., Winter, K. Crassulacean acid metabolism and epiphytism linked to adaptive radiations in the Orchidaceae. Plant Physiology 2009, Volume 149 (4): 1838-1847
  • Uno, Y., Rodriguez Milla, M. A., Maher, E., Cushman, J. C. Identification of proteins that interact with catalytically active calcium-dependent protein kinases from Arabidopsis. Molecular Genetics and Genomics 2009, Volume 281 (4): 375-390

2008

  • Bradburne C, Chung MC, Zong Q, Schlauch K, Liu D, Popova T, Popova A, Bailey C, Soppet D, and Popov S. Transcriptional and apoptotic responses of THP-1 cells to challenge with toxigenic, and non-toxigenic Bacillus anthracis. BMC Immunology 2008 Nov 13; 9:67.
  • Breland A, Nasser S, Schlauch K, Nicolescu M, Harris FC. Efficient Influenza A Virus Origin Detection. Journal of Electronics & Computer Science 2008, December, Vol.10, No.2.
  • Cushman JC, Tillett RL, Wood JA, Branco JA, Schlauch KA. Large-scale mRNA expression profiling in the common ice plant, Mesembryanthemum crystallinum, performing C3 photosynthesis and Crassulacean acid metabolism (CAM). J. Exp. Botany 2008, 59: 1875 - 1894
  • Cushman JC, Agarie S, Albion RL, Elliot SM, Taybi T, Borland AM. (2008) Isolation and characterization of mutants of ice plant, Mesembryanthemum crystallinum, deficient in Crassulacean acid metabolism. Plant Physiol. 2008 May;147(1):228-38. PMID: 18326789
  • Heyden M, Bründermann E, Heugen U, Niehues G, Leitner DM, Havenith M. Long-range influence of carbohydrates on the solvation dynamics of water--answers from terahertz absorption measurements and molecular modeling simulations. J Am Chem Soc. 2008 Apr 30;130(17):5773-9. PMID:18393415
  • Horan K, Jang C, Bailey-Serres J, Mittler R, Shelton C, Harper JF, Zhu J-K, Cushman JC, Gollery M, Girke T. Annotating genes of known and unknown function by large-scale co-expression analysis. Plant Physiol. 2008 147: 41-57
  • Morsy MR, Gouthu S, Orchard S, Thorneycroft D, Harper JF, Mittler R, Cushman JC. Charting Plant Interactomes: Possibilities and Challenges. Trends in Plant Science 2008 13: 183-191
  • Song L, Ciftci-Yilmaz S, Harper J, Cushman JC, Mittler R. (2008) Enhanced tolerance to oxidative stress in transgenic Arabidopsis thaliana plants expressing proteins of unknown function. Plant Physiol. 2008 148: 280-292
  • Wu Y, Yoder A, Yu D, Wang W, Liu J, Barrett T, Wheeler D, Schlauch, K. Cofilin activation in peripheral CD4 T cells of HIV-1 infected patients: a pilot study. Retrovirology 2008, 5:95

2007

  • Chen, C., Beck, B.W., Krause, K., Warth, T., and Pettitt, B.M. Effects of Dimerization of Serratia marcescens Endonuclease on Water Dynamics. Biopolymers 2007 Feb 15;85(3):241-52. PMID: 7133507
  • Cramer GR, Ergül A, Grimplet J, Tillett RL, Tattersall EAR, Bohlman MC, Vincent D, Sonderegger J, Evans J, Osborne C, Quilici D, Schlauch KA, Schooley DA, Cushman JC. Water and salinity stress in grapevines: early and late changes in transcript and metabolite profiles. Funct. Int. Genomics 2007 Apr; 7:111-134
  • Deluc LG, Grimplet J, Wheatley MD, Tillett RL, Quilici DR, Osborne C, Schooley DA, Schlauch KA, Cushman JC, Cramer GR. Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development. BMC Genomics 2007 Nov 22;8(1):429 
  • Gollery, M. Your database is obsolete: The promise of contextual bioinformatics. Bioinformation 2007; 1(9): 356. PMID: 17597919
  • Gollery Martin, Harper Jeff, Cushman John, Mittler Taliah, Mittler Ron. POFs: what we don't know can hurt us. Trends Plant Sci 12 11, 2007 Nov pp.492-6
  • Grimplet J, Deluc L, Tillett R, Wheatley M, Schlauch K, Cramer G, Cushman J. Tissue-specific mRNA expression profiling in grape berry tissues. BMC Genomics. 2007 Jun 21; 8:187
  • Tattersall EA, Grimplet J, Deluc LG, Wheatley MD, Vincent D, Osborne C, Ergül A, Lomen E, Blank RR, Schlauch KA, Cushman JC, Cramer GR. Transcript abundance profiles reveal larger and more complex responses of grapevine to chilling as compared to osmotic and salinity stress. Funct. Int. Genomics. 2007 Oct; 7:317-33
  • Vincent D, Ergül A, Bohlman MC, Tattersall EA, Tillett RL, Wheatley MD, Woolsey R, Quilici DR, Joets J, Schlauch K, Schooley D, Cushman JC, and Cramer GC. Proteomic analysis reveals differences between Vitis vinifera L. cv. Chardonnay and cv. Cabernet Sauvignon and their responses to water deficit and salinity. Journal of Exp. Botany 2007; 58:1873-1892

2006

  • Bearfield, J. C., Keeling, C. I., Young, S., Blomquist, G. J., Tittiger, C. Isolation, endocrine regulation and mRNA distribution of the 3-hydroxy-3-methylglutaryl coenzyme A synthase (HMG-S) gene from the pine engraver, Ips pini (Coleoptera: Scolytidae) Insect Molecular Biology 2006 15 (2)
  • Borland AM, Elliott S, Pater B, Taybi T, Cushman JC, Barnes B. Are the metabolic components of crassulacean acid metabolism up-regulated in response to an increase in oxidative burden? J. Exp. Bot. 2006 57:319-328
  • Chen C, Beck, BW, Krause K, Pettitt BM. Solvent participation in Serratia marcescens endonuclease complexes. Proteins 2006 62(4):982-995
  • Gollery M, Harper J, Cushman J, Mittler T, Girke T, Zhu J-K, Bailey-Serres J, Mittler R. What Makes Species Unique? A Role for Genes with Unknown Function. Genomic Research 2006 7:R57
  • Gollery, M., J. Harper, T. Mittler, J. Cushman, T. Girke, J. Bailey-Serres, R. Mittler. What Makes Species Unique? The Contribution of Proteins with Obscure Features. Genome Biology 2006, 7:R57
  • Grzymski, JJ, Carter BJ, DeLong EF, Feldman RA, Ghadiri A, Murray AE. Comparative Genomics of DNA Fragments from Six Antarctic Marine Planktonic Bacteria. Applied and Environmental Microbiology 2006, Vol 72, No 2, pp. 1532-1541
  • Honeybee genome sequencing consortium. Insights into social insects from the genome of the honeybee Apis mellifera. Nature 2006 Oct 26; 443(7114):931-49
  • Iturriaga, G, Cushman MAF, Cushman JC (2006) An EST catalogue from the resurrection plant Selaginella lepidophylla reveals stress-adaptive genes. Plant Science 2006 170: 1173-1184.
  • Miller G, Mittler R. Could plant HSFs function as hydrogen peroxide sensors? Ann. Bot. 2006 Aug;98(2):279-88. PMID: 16740587
  • Mittler R. Abiotic Stress, the Field Environment and Stress Combination. Trends Plant Sci. 2006 1: 15-19
  • Rodriguez Milla MA, Uno Y, Townsend J, Maher E, Cushman JC. 2006, A novel yeast two-hybrid approach to identify CDPK substrates: Characterization of the interaction between AtCPK11 and AtDi19, a nuclear zinc finger protein1 FEBS Lett 2006 580: 904-911
  • Salzameda B, Facemyer KC, Beck BW, Cremo CR. The N-terminal lobes of both regulatory light chains interact with the tail domain in the 10 S-inhibited conformation of smooth muscle myosin. J Biol Chem. 2006 Dec 15;281(50):38801-11 
  • Suzuki N, Mittler R Reactive oxygen species and temperature stresses: A delicate balance between signaling and destruction. Physiol. Plant. 2006 126: 45-51

2005

  • Boxall SF, Foster JM, Bohnert HJ, Cushman JC, Nimmo HG, Hartwell J. Conservation and divergence of the central circadian clock in the stress-inducible CAM plant Mesembryanthemum crystallinum: clock operation in a CAM halophyte reveals clock compensation against abiotic stress. Plant Physiol. 2005 137: 969-982
  • Cramer GR, Cushman JC, Schooley DA, Quilici D, Vincent D, Bohlman MC, Ergül A, Tattersall EAT, Tillett R, Evans J, Delacruz R, Schlauch K, Mendes P. Progress in bioinformatics - the challenge of integrating transcriptomic, proteomic and metabolomic information. Acta Hort 2005 689: 417-425
  • Davletova S, Rizhsky L, Liang H, Shengqiang Z, Oliver DJ, Coutu J, Shulaev V, Schlauch K, Mittler R Cytosolic ascorbate peroxidase 1 is a central component of the reactive oxygen gene network of Arabidopsis. Plant Cell 2005 17: 268-281
  • Davletova S, Schlauch K, Coutu J, Mittler R (2005) The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Plant Physiol. 2005 139: 847-856
  • Gehrig HH, Wood J, Cushman MA, Virgo A, Cushman JC, Winter K. Large gene family of phosphoenolpyruvate carboxylase in the Crassulacean acid metabolism plant Kalanchoe pinnata (Crassulaceae). Functional Plant Biology 2005 32: 467-472 
  • Goes da Silva F, Iandolino A, Lim H, Baek JM, Leslie A, Xu J, Cook DR, and Al-Kayal F, Bohlman MC, Cushman MA, Ergül A, Figueroa R, Kabuloglu EK, Osborne C, Rowe J, Tattersall EA, Cramer GR, Cushman JC. Characterizing the grape transcriptome: analysis of ESTs from multiple Vitis species and development of a compendium of gene expression during berry development. Plant Physiol. 2005 139: 574-597
  • Kidd T, Abu-Shumays R, Katzen A, Sisson JC, Jimenez G, Pinchin S, Sullivan W, Ish-Horowicz D. The epsilon-subunit of mitochondrial ATP synthase is required for normal spindle orientation during the Drosophila embryonic divisions. Genetics 2005 170(2):697-708
  • Kore-eda S, Noake C, Ohishi M, Ohnishi J, Cushman JC. Transcriptional regulation of organellar metabolite transporters during induction of crassulacean acid metabolism in Mesembryanthemum crystallinum. Functional Plant Biology 2005 32:451-466
  • Suzuki N, Rizhsky L, Liang H, Shuman J, Shulaev V, Mittler R Enhanced tolerance to environmental stresses in transgenic plants expressing the transcriptional co-activator MBF1. Plant Physiol. 2005 139, 1313-1322
  • Tattersall EAR, Ergül A, AlKayal F, DeLuc L, Cushman JC, Cramer, Grant R.. Comparison of methods for isolating high-quality RNA from leaves of grapevine. Amer. J. Vitic. Enol. 2005 56:400-406

2004

  • Dolan E, Yelle R, Beck B, Fischer J, and Ichiye T. Protein Control of Electron Transfer Rates via Polarization: Molecular Dynamics Studies of Rubredoxin. Biophys J 2004 86(4):2030-2036
  • Kishore VK, Velasco P, Shintani DK, Rowe J, Rosato C, Adair N, Slabaugh MB, Knapp SJ. Conserved simple sequence repeats for the Limnanthaceae (Brassicales). Theor Appl Genet. 2004 Feb;108(3):450-7. PMID: 14647896 
  • Mittler R, Vaderauwera S, Gollery M and Van Breusegem F. The Reactive Oxygen Gene Network of Plants. Trends in Plant Science 2004, Vol 9, Issue 10, pp 490-498

Book Chapters

  • Schlauch, KA, Grimplet, J, Cushman JC, Cramer, GC. Transcriptomics analysis methods: microarray data processing, analysis and visualization using the Affymetrix GeneChip® Vitis vinifera genome array, in Methods & Results in Grapevine Research, Serge Delrot, Hipolito Medrano Gil, Etti Or, Luigi Bavaresco, Stella Grando editors. 2010 Chap 22, pp. 317-334
  • Grimplet J, Deluc LG, Schlauch KA, Wheatley M, Cramer GR, Cushman JC. Tissue-specific mRNA Expression Profiling in Grape Berry under Well-Watered and Water Deficit Stress. In: Macromolecules and Secondary Metabolites of Grapevine and Wine. Eds. P. Jeandet, C. Clément and A. Conreaux. 2007 Lavoisier, Paris, France, pp. 53-59

Recent Refereed Conference Proceedings

  • Jones M, Johnson M, Samourjian E, Schlauch K, Ozobia N. ERCP and laparoscopic cholecystectomy in a combined (one-step) procedure: a random comparison to the standard (two-step) procedure. Surg Endosc. 2013 Jun;27(6):1907-12. PMID: 23239300.
  • Feller C, Schlauch K, Harris FC. An Introduction to Proactive Server Preservation in an HPC Environment. 2nd International Conference on Advanced Computing and Communication (ACC 2012), June 27-29, 2012, Los Angeles, USA
  • Breland A, Schlauch, K, Nicolescu M, Harris FC. An Annotated k-deep Prefix Tree for (1-k)-mer Based Sequence Comparisons. 2010. Proceedings of the Association for Computing Machinery International Conference on Bioinformatics and Computational Biology (ACM-BCB 2010), August 2-4, 2010, Niagara Falls
  • Breland A, Schlauch K, Gunes M, Harris FC. Fast Graph Approaches to Measure Influenza Transmission Across Geographically Distributed Host Types. Proceedings of the Association for Computing Machinery International Conference on Bioinformatics and Computational Biology (ACM-BCB 2010), August 2-4, 2010, Niagara Falls
  • Breland A, Gunes MH, Schlauch KA, Harris FC. Mixing Patterns in a Global Influenza A Virus Network Using Whole Genome Comparisons. Proceedings of Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2010), May 2-5, 2010, Montreal, Canada 
  • Breland A, Nasser S, Schlauch K, Harris FC. Influenza A Virus (H3N2) Genomic Sequence Difference Measures Based on Word Absence and Expression Levels. Proceedings of ISCA's Computer Applications in Industry and Engineering (CAINE 2008). November 12-14, 2008, Honolulu, HI, Pages 1-6

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